Package index • DImodelsVis

All functions

add_ID_terms() add_interaction_terms(): Add identity and interaction terms used in a Diversity-Interactions (DI) model to new data

prop_to_tern_proj() tern_to_prop_proj(): Project 3-d compositional data onto x-y plane and vice versa

add_add_var(): Add additional variables to data via cartesian product

add_prediction(): Add predictions and uncertainty interval to data using either a model object or model coefficients.

conditional_ternary(): DI specific wrapper for conditional ternary diagrams

conditional_ternary_data(): Data preparation for conditional ternary diagrams

conditional_ternary_plot(): Conditional ternary diagrams

copy_attributes(): Copy attributes from one object to another

custom_filter(): Special custom filtering for compositional data

get_colours(): Return colour-blind friendly colours

get_equi_comms(): Get all equi-proportional communities at specific levels of richness

get_shades(): Returns shades of colours

gradient_change(): DI specific wrapper for visualising change in response over diversity gradient

gradient_change_data(): Data preparation for visualising change in response over diversity gradient

gradient_change_plot(): Visualise change in response over diversity gradient

group_prop(): Combine variable proportions into groups

grouped_ternary(): DI specific wrapper for grouped ternary diagrams

grouped_ternary_data(): Prepare data for grouped ternary diagrams

grouped_ternary_plot(): Grouped ternary diagrams

model_diagnostics(): DI specific wrapper of diagnostics plots for regression models with compositional predictors

model_diagnostics_data(): Data preparation of diagnostics plots for regression models with compositional predictors

model_diagnostics_plot(): Diagnostics plots for regression models with compositional predictors

model_selection(): DI specific wrapper for visualising model selection

model_selection_data(): Prepare data for visualising model selection

model_selection_plot(): Visualise model selection

prediction_contributions(): Model term contributions to predicted response

prediction_contributions_data(): Model term contributions to predicted response

prediction_contributions_plot(): Visualise model term contributions to predicted response

simplex_path(): DI specific for visualising change in response across points in the simplex space

simplex_path_data(): Prepare data for visualising change in response across points in the simplex space

simplex_path_plot(): Visualising change in response across points in the simplex space

ternary_data(): Prepare data for showing contours in ternary diagrams.

ternary_plot(): Ternary diagrams

theme_DI(): Default theme for DImodelsVis

visualise_effects(): DI specific wrapper of effects plot for compositional variables

visualise_effects_data(): Prepare data for effects plots of compositional predictors

visualise_effects_plot(): Effects plot for compositional predictors